=>> Building biology/py-libsedml build started at Tue Dec 16 12:00:37 EST 2025 port directory: /usr/ports/biology/py-libsedml package name: py311-libsedml-2.0.33 building for: FreeBSD pkg.DaveG.ca 14.3-RELEASE-p1 FreeBSD 14.3-RELEASE-p1 1403000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 837 Jun 29 20:14 /usr/ports/biology/py-libsedml/Makefile Ports top last git commit: 10f7dee57a4c Ports top unclean checkout: no Port dir last git commit: 0097ef9a2cad Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1403000 Job Id: 14 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p1 1403000 UNAME_r=14.3-RELEASE-p1 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/14/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_3_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-libsedml/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-libsedml/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-libsedml/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-libsedml/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-libsedml/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-libsedml/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-libsedml/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-libsedml/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-libsedml/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-libsedml/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-libsedml/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-libsedml/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/py-libsedml/work-py311/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lsedml -lsbml -lnuml -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/libsedml" EXAMPLESDIR="share/examples/libsedml" DATADIR="share/libsedml" WWWDIR="www/libsedml" ETCDIR="etc/libsedml" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libsedml DOCSDIR=/usr/local/share/doc/libsedml EXAMPLESDIR=/usr/local/share/examples/libsedml WWWDIR=/usr/local/www/libsedml ETCDIR=/usr/local/etc/libsedml --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-libsedml-2.0.33 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [pkg.DaveG.ca] Installing pkg-2.4.2_1... [pkg.DaveG.ca] Extracting pkg-2.4.2_1: .......... done ===> py311-libsedml-2.0.33 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-libsedml-2.0.33 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-libsedml-2.0.33 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-libsedml-2.0.33 for building => SHA256 Checksum OK for fbergmann-libSEDML-v2.0.33_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-libsedml-2.0.33 for building ===> Extracting for py311-libsedml-2.0.33 => SHA256 Checksum OK for fbergmann-libSEDML-v2.0.33_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-libsedml-2.0.33 ===> Applying FreeBSD patches for py311-libsedml-2.0.33 from /usr/ports/biology/py-libsedml/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-libsedml-2.0.33 depends on executable: swig - not found ===> Installing existing package /packages/All/swig-4.3.1.pkg [pkg.DaveG.ca] Installing swig-4.3.1... [pkg.DaveG.ca] `-- Installing pcre2-10.47_1... [pkg.DaveG.ca] `-- Extracting pcre2-10.47_1: .......... done [pkg.DaveG.ca] Extracting swig-4.3.1: .......... done ===> py311-libsedml-2.0.33 depends on executable: swig - found ===> Returning to build of py311-libsedml-2.0.33 ===> py311-libsedml-2.0.33 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.10.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.10... [pkg.DaveG.ca] `-- Installing expat-2.7.3... [pkg.DaveG.ca] `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.4.1... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.1: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.51.0... [pkg.DaveG.ca] `-- Extracting libuv-1.51.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.4_2... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.4_2: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.10: .......... done ===> py311-libsedml-2.0.33 depends on file: /usr/local/bin/cmake - found ===> Returning to build of py311-libsedml-2.0.33 ===> py311-libsedml-2.0.33 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.13.1,4.pkg [pkg.DaveG.ca] Installing ninja-1.13.1,4... [pkg.DaveG.ca] `-- Installing python311-3.11.14... [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.1... [pkg.DaveG.ca] | `-- Extracting readline-8.3.1: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] Extracting ninja-1.13.1,4: ..... done ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-libsedml-2.0.33 depends on executable: ninja - found ===> Returning to build of py311-libsedml-2.0.33 ===> py311-libsedml-2.0.33 depends on file: /usr/local/bin/python3.11 - found ===> py311-libsedml-2.0.33 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-libsedml-2.0.33 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-libsedml-2.0.33 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-libsedml-2.0.33 depends on shared library: libsedml.so - not found ===> Installing existing package /packages/All/libsedml-2.0.33_1.pkg [pkg.DaveG.ca] Installing libsedml-2.0.33_1... [pkg.DaveG.ca] `-- Installing libnuml-1.1.7_1... [pkg.DaveG.ca] | `-- Installing libsbml-5.20.5_1... [pkg.DaveG.ca] | | `-- Installing libxml2-2.14.6... [pkg.DaveG.ca] | | `-- Extracting libxml2-2.14.6: .......... done [pkg.DaveG.ca] | `-- Extracting libsbml-5.20.5_1: .......... done [pkg.DaveG.ca] `-- Extracting libnuml-1.1.7_1: .......... done [pkg.DaveG.ca] Extracting libsedml-2.0.33_1: .......... done ===> py311-libsedml-2.0.33 depends on shared library: libsedml.so - found (/usr/local/lib/libsedml.so) ===> Returning to build of py311-libsedml-2.0.33 ===> py311-libsedml-2.0.33 depends on shared library: libsbml.so - found (/usr/local/lib/libsbml.so) ===> py311-libsedml-2.0.33 depends on shared library: libnuml.so - found (/usr/local/lib/libnuml.so) =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-libsedml-2.0.33 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/py-libsedml/work-py311/.build CMake Warning (dev) in CMakeLists.txt: No project() command is present. The top-level CMakeLists.txt file must contain a literal, direct call to the project() command. Add a line of code such as project(ProjectName) near the top of the file, but after cmake_minimum_required(). CMake is pretending there is a "project(Project)" command on the first line. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in CMakeLists.txt: cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found SWIG: /usr/local/bin/swig (found version "4.3.1") CMake Warning (dev) at CMakeLists.txt:3 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.11 (found version "3.11.14") CMake Warning (dev) at CMakeLists.txt:8 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/local/lib/libpython3.11.so (found version "3.11.14") CMake Warning (dev) in CMakeLists.txt: No cmake_minimum_required command is present. A line of code such as cmake_minimum_required(VERSION 3.31) should be added at the top of the file. The version specified may be lower if you wish to support older CMake versions for this project. For more information run "cmake --help-policy CMP0000". This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done (2.5s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_COLOR_MAKEFILE CMAKE_C_FLAGS_RELEASE CMAKE_EXE_LINKER_FLAGS CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED Python3_EXECUTABLE Python_EXECUTABLE THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/biology/py-libsedml/work-py311/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-libsedml-2.0.33 [ 33% 1/3] cd /wrkdirs/usr/ports/biology/py-libsedml/work-py311/.build && /usr/local/bin/swig -I/wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python/../swig/ -I/usr/local/include -I/wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python/../../ -I/wrkdirs/usr/ports/biology/py-libsedml/work-py311/.build/../../ -I/wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python/../../sedml -I/wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python -I/ -I/ -c++ -python -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN= -DLIBSBML_CPP_NAMESPACE_END= -DLIBSBML_CPP_NAMESPACE_QUALIFIER= -DLIBSBML_CPP_NAMESPACE_USE= -DLIBNUML_CPP_NAMESPACE_BEGIN= -DLIBNUML_CPP_NAMESPACE_END= -DLIBNUML_CPP_NAMESPACE_QUALIFIER= -DLIBNUML_CPP_NAMESPACE_USE= -o /wrkdirs/usr/ports/biology/py-libsedml/work-py311/.build/libsedml_wrap.cpp /wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python/libsedml.i && /usr/local/bin/cmake -DCUR_BIN_DIRECTORY="/wrkdirs/usr/ports/biology/py-libsedml/work-py311/.build" -DVERSION="" -P /wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python/add_version.cmake /wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python/local-contrib.i:217: Warning 303: %extend defined for an undeclared class SedNamespacesList. /wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python/local.i:95: Warning 401: Nothing known about base class 'std::basic_ios< char,std::char_traits< char > >'. Ignored. /wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python/local.i:95: Warning 401: Maybe you forgot to instantiate 'std::basic_ios< char,std::char_traits< char > >' using %template. Python: patch loader Python: Add Version to generated file Python: create 3.x version [ 66% 2/3] /usr/local/libexec/ccache/c++ -DLIBSEDML_STATIC -DSWIG_DIRECTOR_NO_UEH -Dbinding_python_lib_EXPORTS -I/wrkdirs/usr/ports/biology/py-libsedml/work-py311/.build/../.. -I/wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python/../.. -I/wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python -I/wrkdirs/usr/ports/biology/py-libsedml/work-py311/libSEDML-2.0.33/src/bindings/python/../swig -I/usr/local/include/python3.11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -MD -MT CMakeFiles/binding_python_lib.dir/libsedml_wrap.o -MF CMakeFiles/binding_python_lib.dir/libsedml_wrap.o.d -o CMakeFiles/binding_python_lib.dir/libsedml_wrap.o -c /wrkdirs/usr/ports/biology/py-libsedml/work-py311/.build/libsedml_wrap.cpp [100% 3/3] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -lsedml -lsbml -lnuml -L/usr/local/lib -Xlinker --dependency-file=CMakeFiles/binding_python_lib.dir/link.d -shared -Wl,-soname,_libsedml.so -o _libsedml.so CMakeFiles/binding_python_lib.dir/libsedml_wrap.o && : =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-libsedml-2.0.33 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-libsedml-2.0.33 ===> Generating temporary packing list [ 0% 1/1] cd /wrkdirs/usr/ports/biology/py-libsedml/work-py311/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/biology/py-libsedml/work-py311/stage/usr/local/lib/python3.11/site-packages/libsedml/_libsedml.so -- Installing: /wrkdirs/usr/ports/biology/py-libsedml/work-py311/stage/usr/local/lib/python3.11/site-packages/libsedml.pth -- Installing: /wrkdirs/usr/ports/biology/py-libsedml/work-py311/stage/usr/local/lib/python3.11/site-packages/libsedml/libsedml.py ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-12-16T17:00:37+0000' 'PKG_NOTE_ports_top_git_hash=10f7dee57a4c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=0097ef9a2cad' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-libsedml-2.0.33 ===> Building py311-libsedml-2.0.33 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-libsedml-2.0.33 build of biology/py-libsedml@py311 | py311-libsedml-2.0.33 ended at Tue Dec 16 12:02:10 EST 2025 build time: 00:01:35