=>> Building biology/py-gffutils build started at Tue Dec 16 11:08:04 EST 2025 port directory: /usr/ports/biology/py-gffutils package name: py311-gffutils-0.13_1 building for: FreeBSD pkg.DaveG.ca 14.3-RELEASE-p1 FreeBSD 14.3-RELEASE-p1 1403000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 937 Mar 10 2025 /usr/ports/biology/py-gffutils/Makefile Ports top last git commit: 10f7dee57a4c Ports top unclean checkout: no Port dir last git commit: 06a08e69f3ac Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1403000 Job Id: 11 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p1 1403000 UNAME_r=14.3-RELEASE-p1 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_3_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-gffutils/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-gffutils/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-gffutils/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-gffutils/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-gffutils/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-gffutils/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-gffutils/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-gffutils/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-gffutils/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-gffutils/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-gffutils/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-gffutils/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py311-gffutils" EXAMPLESDIR="share/examples/py311-gffutils" DATADIR="share/py311-gffutils" WWWDIR="www/py311-gffutils" ETCDIR="etc/py311-gffutils" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-gffutils DOCSDIR=/usr/local/share/doc/py311-gffutils EXAMPLESDIR=/usr/local/share/examples/py311-gffutils WWWDIR=/usr/local/www/py311-gffutils ETCDIR=/usr/local/etc/py311-gffutils --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-gffutils-0.13_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [pkg.DaveG.ca] Installing pkg-2.4.2_1... [pkg.DaveG.ca] Extracting pkg-2.4.2_1: .......... done ===> py311-gffutils-0.13_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-gffutils-0.13_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-gffutils-0.13_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-gffutils-0.13_1 for building => SHA256 Checksum OK for gffutils-0.13.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-gffutils-0.13_1 for building ===> Extracting for py311-gffutils-0.13_1 => SHA256 Checksum OK for gffutils-0.13.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-gffutils-0.13_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-gffutils-0.13_1 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg.DaveG.ca] Installing py311-setuptools-63.1.0_3... [pkg.DaveG.ca] `-- Installing python311-3.11.14... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.1... [pkg.DaveG.ca] | `-- Extracting readline-8.3.1: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] Extracting py311-setuptools-63.1.0_3: .......... done ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-gffutils-0.13_1 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-gffutils-0.13_1 ===> py311-gffutils-0.13_1 depends on file: /usr/local/bin/python3.11 - found ===> py311-gffutils-0.13_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-gffutils-0.13_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-gffutils-0.13_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-gffutils-0.13_1 /usr/local/lib/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing ' 0.13' to '0.13' warnings.warn(tmpl.format(**locals())) running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-gffutils-0.13_1 /usr/local/lib/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing ' 0.13' to '0.13' warnings.warn(tmpl.format(**locals())) running build running build_py creating build creating build/lib creating build/lib/gffutils copying gffutils/attributes.py -> build/lib/gffutils copying gffutils/helpers.py -> build/lib/gffutils copying gffutils/gffwriter.py -> build/lib/gffutils copying gffutils/pybedtools_integration.py -> build/lib/gffutils copying gffutils/iterators.py -> build/lib/gffutils copying gffutils/__init__.py -> build/lib/gffutils copying gffutils/interface.py -> build/lib/gffutils copying gffutils/version.py -> build/lib/gffutils copying gffutils/inspect.py -> build/lib/gffutils copying gffutils/feature.py -> build/lib/gffutils copying gffutils/merge_criteria.py -> build/lib/gffutils copying gffutils/bins.py -> build/lib/gffutils copying gffutils/constants.py -> build/lib/gffutils copying gffutils/biopython_integration.py -> build/lib/gffutils copying gffutils/parser.py -> build/lib/gffutils copying gffutils/exceptions.py -> build/lib/gffutils copying gffutils/convert.py -> build/lib/gffutils copying gffutils/create.py -> build/lib/gffutils creating build/lib/gffutils/scripts copying gffutils/scripts/gffutils-flybase-convert.py -> build/lib/gffutils/scripts creating build/lib/gffutils/test copying gffutils/test/test_merge.py -> build/lib/gffutils/test copying gffutils/test/test_1.py -> build/lib/gffutils/test copying gffutils/test/conftest.py -> build/lib/gffutils/test copying gffutils/test/helpers_test.py -> build/lib/gffutils/test copying gffutils/test/__init__.py -> build/lib/gffutils/test copying gffutils/test/feature_test.py -> build/lib/gffutils/test copying gffutils/test/test_cli.py -> build/lib/gffutils/test copying gffutils/test/test_issues.py -> build/lib/gffutils/test copying gffutils/test/test_biopython_integration.py -> build/lib/gffutils/test copying gffutils/test/synth_test_base.py -> build/lib/gffutils/test copying gffutils/test/parser_test.py -> build/lib/gffutils/test copying gffutils/test/test_merge_all.py -> build/lib/gffutils/test copying gffutils/test/attr_test_cases.py -> build/lib/gffutils/test copying gffutils/test/test_iterators.py -> build/lib/gffutils/test copying gffutils/test/performance_evaluation.py -> build/lib/gffutils/test copying gffutils/test/expected.py -> build/lib/gffutils/test creating build/lib/gffutils/test/data copying gffutils/test/data/keep-order-test.gtf -> build/lib/gffutils/test/data copying gffutils/test/data/gff_example1.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/gff_example1.gff3.gz -> build/lib/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/lib/gffutils/test/data copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/lib/gffutils/test/data copying gffutils/test/data/synthetic.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/gencode-v19.gtf -> build/lib/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa.fai -> build/lib/gffutils/test/data copying gffutils/test/data/sharr.gtf -> build/lib/gffutils/test/data copying gffutils/test/data/F3-unique-3.v2.gff -> build/lib/gffutils/test/data copying gffutils/test/data/jgi_gff2.txt -> build/lib/gffutils/test/data copying gffutils/test/data/gms2_example.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa -> build/lib/gffutils/test/data copying gffutils/test/data/issue167.gff -> build/lib/gffutils/test/data copying gffutils/test/data/wormbase_gff2_alt.txt -> build/lib/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/lib/gffutils/test/data copying gffutils/test/data/keyval_sep_in_attrs.gff -> build/lib/gffutils/test/data copying gffutils/test/data/issue_197.gff -> build/lib/gffutils/test/data copying gffutils/test/data/intro_docs_example.gff -> build/lib/gffutils/test/data copying gffutils/test/data/mouse_extra_comma.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/lib/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf.db -> build/lib/gffutils/test/data copying gffutils/test/data/nonascii -> build/lib/gffutils/test/data copying gffutils/test/data/FBgn0031208.gff -> build/lib/gffutils/test/data copying gffutils/test/data/download-large-annotation-files.sh -> build/lib/gffutils/test/data copying gffutils/test/data/ncbi_gff3.txt -> build/lib/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/lib/gffutils/test/data copying gffutils/test/data/gencode.vM8.chromsizes.txt -> build/lib/gffutils/test/data copying gffutils/test/data/ensembl_gtf.txt -> build/lib/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/lib/gffutils/test/data copying gffutils/test/data/hybrid1.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/lib/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf -> build/lib/gffutils/test/data copying gffutils/test/data/wormbase_gff2.txt -> build/lib/gffutils/test/data copying gffutils/test/data/random-chr.gff -> build/lib/gffutils/test/data copying gffutils/test/data/glimmer_nokeyval.gff3 -> build/lib/gffutils/test/data copying gffutils/test/data/issue174.gtf -> build/lib/gffutils/test/data copying gffutils/test/data/unsanitized.gff -> build/lib/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/lib/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/lib/gffutils/test/data running build_scripts creating build/scripts-3.11 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.11 changing mode of build/scripts-3.11/gffutils-cli from 644 to 755 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-gffutils-0.13_1 depends on package: py311-argcomplete>=1.9.4 - not found ===> Installing existing package /packages/All/py311-argcomplete-3.6.3.pkg [pkg.DaveG.ca] Installing py311-argcomplete-3.6.3... [pkg.DaveG.ca] Extracting py311-argcomplete-3.6.3: .......... done ===> py311-gffutils-0.13_1 depends on package: py311-argcomplete>=1.9.4 - found ===> Returning to build of py311-gffutils-0.13_1 ===> py311-gffutils-0.13_1 depends on package: py311-argh>=0.26.2 - not found ===> Installing existing package /packages/All/py311-argh-0.31.3.pkg [pkg.DaveG.ca] Installing py311-argh-0.31.3... [pkg.DaveG.ca] Extracting py311-argh-0.31.3: .......... done ===> py311-gffutils-0.13_1 depends on package: py311-argh>=0.26.2 - found ===> Returning to build of py311-gffutils-0.13_1 ===> py311-gffutils-0.13_1 depends on package: py311-pyfaidx>=0.5.5.2 - not found ===> Installing existing package /packages/All/py311-pyfaidx-0.5.9.5_1.pkg [pkg.DaveG.ca] Installing py311-pyfaidx-0.5.9.5_1... [pkg.DaveG.ca] `-- Installing py311-six-1.17.0... [pkg.DaveG.ca] `-- Extracting py311-six-1.17.0: ........ done [pkg.DaveG.ca] Extracting py311-pyfaidx-0.5.9.5_1: .......... done ===> py311-gffutils-0.13_1 depends on package: py311-pyfaidx>=0.5.5.2 - found ===> Returning to build of py311-gffutils-0.13_1 ===> py311-gffutils-0.13_1 depends on package: py311-simplejson>0 - not found ===> Installing existing package /packages/All/py311-simplejson-3.18.4_1.pkg [pkg.DaveG.ca] Installing py311-simplejson-3.18.4_1... [pkg.DaveG.ca] Extracting py311-simplejson-3.18.4_1: .......... done ===> py311-gffutils-0.13_1 depends on package: py311-simplejson>0 - found ===> Returning to build of py311-gffutils-0.13_1 ===> py311-gffutils-0.13_1 depends on package: py311-six>=1.12.0 - found ===> py311-gffutils-0.13_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-gffutils-0.13_1 ===> Generating temporary packing list /usr/local/lib/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing ' 0.13' to '0.13' warnings.warn(tmpl.format(**locals())) running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_scripts running install_lib creating /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/attributes.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/helpers.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/gffwriter.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/pybedtools_integration.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/iterators.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/__init__.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/interface.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/version.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/inspect.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/feature.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/merge_criteria.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/bins.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/constants.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/biopython_integration.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/parser.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/exceptions.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils copying build/lib/gffutils/convert.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils creating /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/test_merge.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/test_1.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/conftest.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/helpers_test.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/__init__.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/feature_test.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/test_cli.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/test_issues.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/test_biopython_integration.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/synth_test_base.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/parser_test.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/test_merge_all.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/attr_test_cases.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/test_iterators.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test copying build/lib/gffutils/test/performance_evaluation.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test creating /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/keep-order-test.gtf -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gff_example1.gff3 -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gff_example1.gff3.gz -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/synthetic.gff3 -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gencode-v19.gtf -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/dm6-chr2L.fa.fai -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/sharr.gtf -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/F3-unique-3.v2.gff -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/jgi_gff2.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gms2_example.gff3 -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/dm6-chr2L.fa -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/issue167.gff -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/wormbase_gff2_alt.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/keyval_sep_in_attrs.gff -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/issue_197.gff -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/intro_docs_example.gff -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/mouse_extra_comma.gff3 -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/FBgn0031208.gtf.db -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/nonascii -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/FBgn0031208.gff -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/download-large-annotation-files.sh -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/ncbi_gff3.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gencode.vM8.chromsizes.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/ensembl_gtf.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/hybrid1.gff3 -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/FBgn0031208.gtf -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/wormbase_gff2.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/random-chr.gff -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/glimmer_nokeyval.gff3 -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/issue174.gtf -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/unsanitized.gff -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/data copying build/lib/gffutils/test/expected.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test creating /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/scripts copying build/lib/gffutils/scripts/gffutils-flybase-convert.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/scripts copying build/lib/gffutils/create.py -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/attributes.py to attributes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/helpers.py to helpers.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/gffwriter.py to gffwriter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/iterators.py to iterators.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/interface.py to interface.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/version.py to version.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/inspect.py to inspect.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/feature.py to feature.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/merge_criteria.py to merge_criteria.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/bins.py to bins.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/constants.py to constants.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/biopython_integration.py to biopython_integration.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/parser.py to parser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/exceptions.py to exceptions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/convert.py to convert.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/test_merge.py to test_merge.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/test_1.py to test_1.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/conftest.py to conftest.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/helpers_test.py to helpers_test.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/feature_test.py to feature_test.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/test_cli.py to test_cli.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/test_issues.py to test_issues.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/parser_test.py to parser_test.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/test_iterators.py to test_iterators.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/performance_evaluation.py to performance_evaluation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/test/expected.py to expected.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils/create.py to create.cpython-311.pyc writing byte-compilation script '/tmp/tmpa7acho_b.py' /usr/local/bin/python3.11 /tmp/tmpa7acho_b.py removing /tmp/tmpa7acho_b.py running install_egg_info running egg_info writing gffutils.egg-info/PKG-INFO writing dependency_links to gffutils.egg-info/dependency_links.txt writing requirements to gffutils.egg-info/requires.txt writing top-level names to gffutils.egg-info/top_level.txt reading manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.rst' under directory 'docs/source' warning: no files found matching '*.py' under directory 'docs/source' warning: no files found matching '*' under directory 'docs/source/images' warning: no files found matching 'docs/Makefile' warning: no files found matching 'docs/make.bat' warning: no files found matching 'gffutils/test/data/__init__.py' warning: no files found matching 'gffutils/test/data/t.py' adding license file 'LICENSE' writing manifest file 'gffutils.egg-info/SOURCES.txt' Copying gffutils.egg-info to /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/lib/python3.11/site-packages/gffutils-0.13-py3.11.egg-info running install_scripts copying build/scripts-3.11/gffutils-cli -> /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/bin changing mode of /wrkdirs/usr/ports/biology/py-gffutils/work-py311/stage/usr/local/bin/gffutils-cli to 755 writing list of installed files to '/wrkdirs/usr/ports/biology/py-gffutils/work-py311/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/gffutils-cli --> bin/gffutils-cli-3.11 Link: @bin/gffutils-cli --> bin/gffutils-cli-3.11 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-12-16T16:08:04+0000' 'PKG_NOTE_ports_top_git_hash=10f7dee57a4c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=06a08e69f3ac' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-gffutils-0.13_1 ===> Building py311-gffutils-0.13_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-gffutils-0.13_1 build of biology/py-gffutils@py311 | py311-gffutils-0.13_1 ended at Tue Dec 16 11:08:18 EST 2025 build time: 00:00:16