=>> Building science/spheral build started at Thu Nov 6 06:27:07 EST 2025 port directory: /usr/ports/science/spheral package name: spheral-2024.06.1_6 building for: FreeBSD pkg.DaveG.ca 14.3-RELEASE-p1 FreeBSD 14.3-RELEASE-p1 1403000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2361 Oct 28 16:11 /usr/ports/science/spheral/Makefile Ports top last git commit: 9bb805acfc67 Ports top unclean checkout: no Port dir last git commit: 67fb95fb3bd5 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500066 Jail OSVERSION: 1403000 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p1 1403000 UNAME_r=14.3-RELEASE-p1 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_3_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/spheral/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/spheral/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/spheral/work/.cache HOME=/wrkdirs/usr/ports/science/spheral/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/spheral/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/spheral/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" LUA_MODLIBDIR=/usr/local/lib/lua/5.4 LUA_MODSHAREDIR=/usr/local/share/lua/5.4 LUA_MODDOCSDIR=/usr/local/share/doc/lua54 LUA_INCDIR=/usr/local/include/lua54 LUA_LIBDIR=/usr/local/lib LUA_VER=5.4 LUA_VER_STR=54 XDG_DATA_HOME=/wrkdirs/usr/ports/science/spheral/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/spheral/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/spheral/work/.cache HOME=/wrkdirs/usr/ports/science/spheral/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/spheral/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/spheral/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/eigen3 -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" LUA_MODLIBDIR=lib/lua/5.4 LUA_MODSHAREDIR=share/lua/5.4 LUA_MODDOCSDIR=share/doc/lua54 LUA_INCDIR=include/lua54 LUA_VER=5.4 LUA_VER_STR=54 PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/spheral" EXAMPLESDIR="share/examples/spheral" DATADIR="share/spheral" WWWDIR="www/spheral" ETCDIR="etc/spheral" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/spheral DOCSDIR=/usr/local/share/doc/spheral EXAMPLESDIR=/usr/local/share/examples/spheral WWWDIR=/usr/local/www/spheral ETCDIR=/usr/local/etc/spheral --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> spheral-2024.06.1_6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.3.1_1.pkg [pkg.DaveG.ca] Installing pkg-2.3.1_1... [pkg.DaveG.ca] Extracting pkg-2.3.1_1: .......... done ===> spheral-2024.06.1_6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of spheral-2024.06.1_6 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by spheral-2024.06.1_6 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by spheral-2024.06.1_6 for building => SHA256 Checksum OK for LLNL-spheral-v2024.06.1_GH0.tar.gz. => SHA256 Checksum OK for LLNL-PolyClipper-e1fe47c_GH0.tar.gz. => SHA256 Checksum OK for LLNL-PYB11Generator-7160812_GH0.tar.gz. => SHA256 Checksum OK for llnl-blt-29eecef_GH0.tar.gz. => SHA256 Checksum OK for llnl-uberenv-126f8de_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by spheral-2024.06.1_6 for building ===> Extracting for spheral-2024.06.1_6 => SHA256 Checksum OK for LLNL-spheral-v2024.06.1_GH0.tar.gz. => SHA256 Checksum OK for LLNL-PolyClipper-e1fe47c_GH0.tar.gz. => SHA256 Checksum OK for LLNL-PYB11Generator-7160812_GH0.tar.gz. => SHA256 Checksum OK for llnl-blt-29eecef_GH0.tar.gz. => SHA256 Checksum OK for llnl-uberenv-126f8de_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for spheral-2024.06.1_6 ===> Applying FreeBSD patches for spheral-2024.06.1_6 from /usr/ports/science/spheral/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> spheral-2024.06.1_6 depends on file: /usr/local/include/polyclipper2d.hh - not found ===> Installing existing package /packages/All/polyclipper-1.2.4.pkg [pkg.DaveG.ca] Installing polyclipper-1.2.4... [pkg.DaveG.ca] Extracting polyclipper-1.2.4: .......... done ===> spheral-2024.06.1_6 depends on file: /usr/local/include/polyclipper2d.hh - found ===> Returning to build of spheral-2024.06.1_6 ===> spheral-2024.06.1_6 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.9.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.9... [pkg.DaveG.ca] `-- Installing expat-2.7.3... [pkg.DaveG.ca] `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.4.1... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.1: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.51.0... [pkg.DaveG.ca] `-- Extracting libuv-1.51.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.4_1... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.4_1: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.9: .......... done ===> spheral-2024.06.1_6 depends on file: /usr/local/bin/cmake - found ===> Returning to build of spheral-2024.06.1_6 ===> spheral-2024.06.1_6 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_4.pkg [pkg.DaveG.ca] Installing eigen-3.4.0_4... [pkg.DaveG.ca] `-- Installing blas-3.12.1... [pkg.DaveG.ca] | `-- Installing gcc13-13.3.0_3... [pkg.DaveG.ca] | | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7... [pkg.DaveG.ca] | | | `-- Installing liblz4-1.10.0,1... [pkg.DaveG.ca] | | | `-- Extracting liblz4-1.10.0,1: .......... done [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7: .......... done [pkg.DaveG.ca] | | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] | `-- Extracting gcc13-13.3.0_3: .......... done [pkg.DaveG.ca] `-- Extracting blas-3.12.1: ..... done [pkg.DaveG.ca] `-- Installing lapack-3.12.1... [pkg.DaveG.ca] `-- Extracting lapack-3.12.1: .......... done [pkg.DaveG.ca] Extracting eigen-3.4.0_4: .......... done ===== Message from gcc13-13.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> spheral-2024.06.1_6 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of spheral-2024.06.1_6 ===> spheral-2024.06.1_6 depends on executable: gfortran13 - found ===> spheral-2024.06.1_6 depends on file: /usr/local/bin/python3.11 - not found ===> Installing existing package /packages/All/python311-3.11.14.pkg [pkg.DaveG.ca] Installing python311-3.11.14... [pkg.DaveG.ca] `-- Installing libffi-3.5.1... [pkg.DaveG.ca] `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] `-- Installing readline-8.2.13_2... [pkg.DaveG.ca] `-- Extracting readline-8.2.13_2: .......... done [pkg.DaveG.ca] Extracting python311-3.11.14: .......... done ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> spheral-2024.06.1_6 depends on file: /usr/local/bin/python3.11 - found ===> Returning to build of spheral-2024.06.1_6 ===> spheral-2024.06.1_6 depends on file: /usr/local/bin/as - found ===> spheral-2024.06.1_6 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> spheral-2024.06.1_6 depends on file: /usr/local/bin/ccache - found ===> Returning to build of spheral-2024.06.1_6 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> spheral-2024.06.1_6 depends on shared library: libaxom_core.so - not found ===> Installing existing package /packages/All/axom-0.10.1_1.pkg [pkg.DaveG.ca] Installing axom-0.10.1_1... [pkg.DaveG.ca] `-- Installing conduit-0.9.5... [pkg.DaveG.ca] | `-- Installing hdf5-1.12.2_2,1... [pkg.DaveG.ca] | | `-- Installing libaec-1.1.4... [pkg.DaveG.ca] | | `-- Extracting libaec-1.1.4: .......... done [pkg.DaveG.ca] | `-- Extracting hdf5-1.12.2_2,1: .......... done [pkg.DaveG.ca] | `-- Installing mpich-4.3.2... [pkg.DaveG.ca] | | `-- Installing hwloc2-2.12.1_1... [pkg.DaveG.ca] | | `-- Installing level-zero-1.24.3... [pkg.DaveG.ca] | | | `-- Installing libfmt-11.2.0... [pkg.DaveG.ca] | | | `-- Extracting libfmt-11.2.0: .......... done [pkg.DaveG.ca] | | | `-- Installing spdlog-1.15.2_3... [pkg.DaveG.ca] | | | `-- Extracting spdlog-1.15.2_3: .......... done [pkg.DaveG.ca] | | `-- Extracting level-zero-1.24.3: .......... done [pkg.DaveG.ca] | | `-- Installing libpciaccess-0.18.1_1... [pkg.DaveG.ca] | | | `-- Installing hwdata-0.399,1... [pkg.DaveG.ca] | | | `-- Extracting hwdata-0.399,1: ...... done [pkg.DaveG.ca] | | `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg.DaveG.ca] | | `-- Installing libxml2-2.14.6... [pkg.DaveG.ca] | | `-- Extracting libxml2-2.14.6: .......... done [pkg.DaveG.ca] | | `-- Extracting hwloc2-2.12.1_1: .......... done [pkg.DaveG.ca] | | `-- Installing json-c-0.18... [pkg.DaveG.ca] | | `-- Extracting json-c-0.18: .......... done [pkg.DaveG.ca] | | `-- Installing libepoll-shim-0.0.20240608... [pkg.DaveG.ca] | | `-- Extracting libepoll-shim-0.0.20240608: .......... done [pkg.DaveG.ca] | | `-- Installing libfabric-1.15.1_4... [pkg.DaveG.ca] | | `-- Extracting libfabric-1.15.1_4: .......... done [pkg.DaveG.ca] | | `-- Installing perl5-5.42.0_1... [pkg.DaveG.ca] | | `-- Extracting perl5-5.42.0_1: .......... done [pkg.DaveG.ca] | `-- Extracting mpich-4.3.2: .......... done [pkg.DaveG.ca] | `-- Installing silo-4.11.68_1... [pkg.DaveG.ca] | `-- Extracting silo-4.11.68_1: .......... done [pkg.DaveG.ca] `-- Extracting conduit-0.9.5: .......... done [pkg.DaveG.ca] `-- Installing hypre-2.33.0_1... [pkg.DaveG.ca] | `-- Installing openblas-0.3.30,2... [pkg.DaveG.ca] | `-- Extracting openblas-0.3.30,2: .......... done [pkg.DaveG.ca] | `-- Installing superlu-7.0.1... [pkg.DaveG.ca] | `-- Extracting superlu-7.0.1: .......... done [pkg.DaveG.ca] `-- Extracting hypre-2.33.0_1: .......... done [pkg.DaveG.ca] `-- Installing lua54-5.4.8... [pkg.DaveG.ca] | `-- Installing libedit-3.1.20251016,1... [pkg.DaveG.ca] | `-- Extracting libedit-3.1.20251016,1: .......... done [pkg.DaveG.ca] `-- Extracting lua54-5.4.8: .......... done [pkg.DaveG.ca] `-- Installing metis-5.1.0.p13_1,1... [pkg.DaveG.ca] `-- Extracting metis-5.1.0.p13_1,1: .......... done [pkg.DaveG.ca] `-- Installing mfem-4.7_1... [pkg.DaveG.ca] | `-- Installing superlu-dist-9.1.0_1... [pkg.DaveG.ca] | `-- Extracting superlu-dist-9.1.0_1: .......... done [pkg.DaveG.ca] `-- Extracting mfem-4.7_1: .......... done [pkg.DaveG.ca] `-- Installing sparsehash-2.0.4... [pkg.DaveG.ca] `-- Extracting sparsehash-2.0.4: .......... done [pkg.DaveG.ca] Extracting axom-0.10.1_1: .......... done ===== Message from metis-5.1.0.p13_1,1: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> spheral-2024.06.1_6 depends on shared library: libaxom_core.so - found (/usr/local/lib/libaxom_core.so) ===> Returning to build of spheral-2024.06.1_6 ===> spheral-2024.06.1_6 depends on shared library: libboost_filesystem.so - not found ===> Installing existing package /packages/All/boost-libs-1.89.0.pkg [pkg.DaveG.ca] Installing boost-libs-1.89.0... [pkg.DaveG.ca] `-- Installing icu-76.1,1... [pkg.DaveG.ca] `-- Extracting icu-76.1,1: .......... done [pkg.DaveG.ca] Extracting boost-libs-1.89.0: .......... done ===== Message from boost-libs-1.89.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> spheral-2024.06.1_6 depends on shared library: libboost_filesystem.so - found (/usr/local/lib/libboost_filesystem.so) ===> Returning to build of spheral-2024.06.1_6 ===> spheral-2024.06.1_6 depends on shared library: libconduit.so - found (/usr/local/lib/libconduit.so) ===> spheral-2024.06.1_6 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> spheral-2024.06.1_6 depends on shared library: libmfem.so - found (/usr/local/lib/libmfem.so) ===> spheral-2024.06.1_6 depends on shared library: libosdCPU.so - not found ===> Installing existing package /packages/All/opensubdiv-3.6.0_3.pkg [pkg.DaveG.ca] Installing opensubdiv-3.6.0_3... [pkg.DaveG.ca] `-- Installing glfw-3.4_2... [pkg.DaveG.ca] | `-- Installing fontconfig-2.15.0_3,1... [pkg.DaveG.ca] | | `-- Installing freetype2-2.14.1... [pkg.DaveG.ca] | | `-- Installing brotli-1.1.0,1... [pkg.DaveG.ca] | | `-- Extracting brotli-1.1.0,1: .......... done [pkg.DaveG.ca] | | `-- Installing png-1.6.50... [pkg.DaveG.ca] | | `-- Extracting png-1.6.50: .......... done [pkg.DaveG.ca] | | `-- Extracting freetype2-2.14.1: .......... done [pkg.DaveG.ca] | `-- Extracting fontconfig-2.15.0_3,1: .......... done [pkg.DaveG.ca] | `-- Installing libX11-1.8.12,1... [pkg.DaveG.ca] | | `-- Installing libxcb-1.17.0... [pkg.DaveG.ca] | | `-- Installing libXau-1.0.12... [pkg.DaveG.ca] | | `-- Extracting libXau-1.0.12: .......... done [pkg.DaveG.ca] | | `-- Installing libXdmcp-1.1.5... [pkg.DaveG.ca] | | | `-- Installing xorgproto-2024.1... [pkg.DaveG.ca] | | | `-- Extracting xorgproto-2024.1: .......... done [pkg.DaveG.ca] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg.DaveG.ca] | | `-- Extracting libxcb-1.17.0: .......... done [pkg.DaveG.ca] | `-- Extracting libX11-1.8.12,1: .......... done [pkg.DaveG.ca] | `-- Installing libXcursor-1.2.3... [pkg.DaveG.ca] | | `-- Installing libXfixes-6.0.1... [pkg.DaveG.ca] | | `-- Extracting libXfixes-6.0.1: ....... done [pkg.DaveG.ca] | | `-- Installing libXrender-0.9.12... [pkg.DaveG.ca] | | `-- Extracting libXrender-0.9.12: ....... done [pkg.DaveG.ca] | `-- Extracting libXcursor-1.2.3: .......... done [pkg.DaveG.ca] | `-- Installing libXi-1.8.2,1... [pkg.DaveG.ca] | | `-- Installing libXext-1.3.6,1... [pkg.DaveG.ca] | | `-- Extracting libXext-1.3.6,1: .......... done [pkg.DaveG.ca] | `-- Extracting libXi-1.8.2,1: .......... done [pkg.DaveG.ca] | `-- Installing libXinerama-1.1.5,1... [pkg.DaveG.ca] | `-- Extracting libXinerama-1.1.5,1: .......... done [pkg.DaveG.ca] | `-- Installing libXrandr-1.5.4... [pkg.DaveG.ca] | `-- Extracting libXrandr-1.5.4: .......... done [pkg.DaveG.ca] | `-- Installing libXxf86vm-1.1.6... [pkg.DaveG.ca] | `-- Extracting libXxf86vm-1.1.6: .......... done [pkg.DaveG.ca] `-- Extracting glfw-3.4_2: .......... done [pkg.DaveG.ca] `-- Installing libICE-1.1.2,1... [pkg.DaveG.ca] `-- Extracting libICE-1.1.2,1: .......... done [pkg.DaveG.ca] `-- Installing libSM-1.2.6,1... [pkg.DaveG.ca] `-- Extracting libSM-1.2.6,1: ........ done [pkg.DaveG.ca] `-- Installing libglvnd-1.7.0... [pkg.DaveG.ca] `-- Extracting libglvnd-1.7.0: .......... done [pkg.DaveG.ca] `-- Installing onetbb-2022.2.0... [pkg.DaveG.ca] `-- Extracting onetbb-2022.2.0: .......... done [pkg.DaveG.ca] `-- Installing ptex-2.4.3... [pkg.DaveG.ca] `-- Extracting ptex-2.4.3: .......... done [pkg.DaveG.ca] Extracting opensubdiv-3.6.0_3: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> spheral-2024.06.1_6 depends on shared library: libosdCPU.so - found (/usr/local/lib/libosdCPU.so) ===> Returning to build of spheral-2024.06.1_6 ===> spheral-2024.06.1_6 depends on shared library: libpolytope.so - not found ===> Installing existing package /packages/All/polytope-0.7.3.pkg [pkg.DaveG.ca] Installing polytope-0.7.3... [pkg.DaveG.ca] Extracting polytope-0.7.3: .......... done ===> spheral-2024.06.1_6 depends on shared library: libpolytope.so - found (/usr/local/lib/libpolytope.so) ===> Returning to build of spheral-2024.06.1_6 ===> spheral-2024.06.1_6 depends on shared library: libqhull_r.so - not found ===> Installing existing package /packages/All/qhull-8.0.2_3,1.pkg [pkg.DaveG.ca] Installing qhull-8.0.2_3,1... [pkg.DaveG.ca] Extracting qhull-8.0.2_3,1: .......... done ===> spheral-2024.06.1_6 depends on shared library: libqhull_r.so - found (/usr/local/lib/libqhull_r.so) ===> Returning to build of spheral-2024.06.1_6 ===> spheral-2024.06.1_6 depends on shared library: libsiloh5.so - found (/usr/local/lib/libsiloh5.so) ===> spheral-2024.06.1_6 depends on shared library: liblua-5.4.so - found (/usr/local/lib/liblua-5.4.so) ===> spheral-2024.06.1_6 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for spheral-2024.06.1_6 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/spheral/work/.build -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- The Fortran compiler identification is GNU 13.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/bin/gfortran13 - skipped -- C++ Compiler ID: Clang -- Compiler warnings ON -- Compiler unused variable warnings ON -- Compiler unused parameter warnings OFF -- Compiler missing include dir warnings ON -- using warning flags -Wno-unused-command-line-argument;-Wno-c++17-extensions;-Wno-unused-parameter -- Fortran flags: -O -Wl,-rpath=/usr/local/lib/gcc13 -Wno-missing-include-dirs -- BLT Version: 0.5.3 -- CMake Version: 3.31.9 -- CMake Build Type: Release -- CMake Executable: /usr/local/bin/cmake CMake Deprecation Warning at cmake/blt/SetupBLT.cmake:87 (cmake_policy): The OLD behavior for policy CMP0076 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. Call Stack (most recent call first): cmake/SetupSpheral.cmake:42 (include) CMakeLists.txt:10 (include) -- Setting CMAKE_CXX_EXTENSIONS to OFF -- MPI Support is ON -- FindMPI Enabled (ENABLE_FIND_MPI == ON) -- Found MPI_C: /usr/local/lib/libmpi.so (found version "4.1") -- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "4.1") -- Found MPI_Fortran: /usr/local/lib/libmpifort.so (found version "4.1") -- Found MPI: TRUE (found version "4.1") -- BLT MPI Compile Flags: -- BLT MPI Include Paths: /usr/local/include/json-c;/usr/local/include/gcc13;/usr/local/include -- BLT MPI Libraries: /usr/local/lib/libmpi.so;/usr/local/lib/libmpicxx.so;/usr/local/lib/libmpifort.so -- BLT MPI Link Flags: SHELL:-Wl,-rpath=/usr/local/lib/gcc13 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc13 -- MPI Executable: /usr/local/bin/mpiexec -- MPI Num Proc Flag: -n -- MPI Command Append: -- Using MPI Fortran header: mpif.h -- OpenMP Support is ON -- Found OpenMP_C: -fopenmp=libomp (found version "5.1") -- Found OpenMP_CXX: -fopenmp=libomp (found version "5.1") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "5.1") -- OpenMP Compile Flags: $<$>:-fopenmp=libomp>;$<$:-fopenmp> -- OpenMP Link Flags: -fopenmp=libomp -- CUDA Support is OFF -- HIP Support is OFF -- Found Git: /wrkdirs/usr/ports/science/spheral/work/.bin/git -- Git Support is ON -- Git Executable: /wrkdirs/usr/ports/science/spheral/work/.bin/git -- Git Version: -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Sphinx support is ON -- Failed to locate Sphinx executable (missing: SPHINX_EXECUTABLE) -- Valgrind support is ON -- Failed to locate Valgrind executable (missing: VALGRIND_EXECUTABLE) -- AStyle support is ON -- Failed to locate AStyle executable (missing: ASTYLE_EXECUTABLE) -- ClangFormat support is ON -- Failed to locate ClangFormat executable (missing: CLANGFORMAT_EXECUTABLE) -- Uncrustify support is ON -- Failed to locate Uncrustify executable (missing: UNCRUSTIFY_EXECUTABLE) -- Yapf support is ON -- Failed to locate Yapf executable (missing: YAPF_EXECUTABLE) -- CMakeFormat support is ON -- Failed to locate CMakeFormat executable (missing: CMAKEFORMAT_EXECUTABLE) -- Cppcheck support is ON -- Failed to locate Cppcheck executable (missing: CPPCHECK_EXECUTABLE) -- ClangQuery support is ON -- Failed to locate ClangQuery executable (missing: CLANGQUERY_EXECUTABLE) -- ClangTidy support is ON -- Failed to locate ClangTidy executable (missing: CLANGTIDY_EXECUTABLE) -- ClangApplyReplacements support is ON -- Failed to locate ClangApplyReplacements executable (missing: CLANGAPPLYREPLACEMENTS_EXECUTABLE) -- C Compiler family is Clang -- Fortran Compiler family is GNU -- Adding optional BLT definitions and compiler flags -- Enabling all compiler warnings on all targets. -- Fortran support enabled. -- CMAKE_C_FLAGS flags are: -Wall -Wextra -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -- CMAKE_CXX_FLAGS flags are: -Wall -Wextra -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/eigen3 -isystem /usr/local/include -- CMAKE_Fortran_FLAGS flags are: -O -Wl,-rpath=/usr/local/lib/gcc13 -Wno-missing-include-dirs -- CMAKE_EXE_LINKER_FLAGS flags are: -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -L/usr/local/lib polyclipper_DIR set. Searching polyclipper for : /usr/local Importing includes for polyclipper CMake Deprecation Warning at /usr/local/lib/cmake/axom-config.cmake:7 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Call Stack (most recent call first): cmake/InstallTPLs.cmake:70 (find_package) cmake/SetupSpheral.cmake:108 (include) CMakeLists.txt:10 (include) CMake Deprecation Warning at /usr/local/lib/cmake/conduit/ConduitConfig.cmake:15 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Call Stack (most recent call first): /usr/local/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) /usr/local/lib/cmake/axom-config.cmake:178 (find_dependency) cmake/InstallTPLs.cmake:70 (find_package) cmake/SetupSpheral.cmake:108 (include) CMakeLists.txt:10 (include) -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found HDF5: hdf5-shared (found version "1.12.2") -- Found Conduit: /usr/local (found version 0.9.5) -- Removing non-existant include directories from Axom's dependencies... boost_DIR set. Searching boost for : /usr/local Importing libraries for /usr/local/lib/libboost_filesystem.so CMake Error at cmake/spheral/SpheralHandleTPL.cmake:43 (find_library): Could not find libboost_system.so_clib using the following names: libboost_system.so Call Stack (most recent call first): cmake/InstallTPLs.cmake:101 (Spheral_Handle_TPL) cmake/SetupSpheral.cmake:108 (include) CMakeLists.txt:10 (include) -- Configuring incomplete, errors occurred! *** Error code 1 Stop. make: stopped in /usr/ports/science/spheral =>> Cleaning up wrkdir ===> Cleaning for spheral-2024.06.1_6 build of science/spheral | spheral-2024.06.1_6 ended at Thu Nov 6 06:27:51 EST 2025 build time: 00:00:46 !!! build failure encountered !!!