=>> Building biology/ngs-sdk build started at Fri Dec 12 01:00:48 EST 2025 port directory: /usr/ports/biology/ngs-sdk package name: ngs-sdk-3.0.1 building for: FreeBSD pkg.DaveG.ca 13.5-RELEASE-p7 FreeBSD 13.5-RELEASE-p7 1305000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1650 Aug 27 2024 /usr/ports/biology/ngs-sdk/Makefile Ports top last git commit: 62d8b1999233 Ports top unclean checkout: no Port dir last git commit: 67dfb32b6e2b Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1305000 Job Id: 03 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1305000 UNAME_v=FreeBSD 13.5-RELEASE-p7 1305000 UNAME_r=13.5-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/03/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_13_5_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=/usr/local/bin/gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work/.cache HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ngs-sdk/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.0 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/ngs" EXAMPLESDIR="share/examples/ngs" DATADIR="share/ngs" WWWDIR="www/ngs" ETCDIR="etc/ngs" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ngs-sdk-3.0.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [pkg.DaveG.ca] Installing pkg-2.4.2_1... [pkg.DaveG.ca] Extracting pkg-2.4.2_1: .......... done ===> ngs-sdk-3.0.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ngs-sdk-3.0.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ngs-sdk-3.0.1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ngs-sdk-3.0.1 for building => SHA256 Checksum OK for ncbi-ngs-3.0.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ngs-sdk-3.0.1 for building ===> Extracting for ngs-sdk-3.0.1 => SHA256 Checksum OK for ncbi-ngs-3.0.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for ngs-sdk-3.0.1 ===> Applying FreeBSD patches for ngs-sdk-3.0.1 from /usr/ports/biology/ngs-sdk/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ngs-sdk-3.0.1 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg.DaveG.ca] Installing gmake-4.4.1... [pkg.DaveG.ca] `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] Extracting gmake-4.4.1: .......... done ===> ngs-sdk-3.0.1 depends on package: gmake>=4.4.1 - found ===> Returning to build of ngs-sdk-3.0.1 ===> ngs-sdk-3.0.1 depends on package: perl5>=5.42.r<5.43 - not found ===> Installing existing package /packages/All/perl5-5.42.0_1.pkg [pkg.DaveG.ca] Installing perl5-5.42.0_1... [pkg.DaveG.ca] Extracting perl5-5.42.0_1: .......... done ===> ngs-sdk-3.0.1 depends on package: perl5>=5.42.r<5.43 - found ===> Returning to build of ngs-sdk-3.0.1 ===> ngs-sdk-3.0.1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> ngs-sdk-3.0.1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of ngs-sdk-3.0.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for ngs-sdk-3.0.1 CONFIGURING ngs-sdk Attempt to call undefined import method with arguments ("catdir") via package "File::Spec" (Perhaps you forgot to load the package?) at konfigure.perl line 44. Configuring NGS-SDK package checking system type... FreeBSD checking machine architecture... amd64 checking for supported architecture... amd64 (64 bits) is supported checking for supported OS... FreeBSD (FreeBSD) is supported checking for supported tool chain... clang tool chain is supported checking for clang... FreeBSD clang version 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd708029e0b2) checking for clang++... yes checking for Python 3... skipped configure: creating 'Makefile.config.FreeBSD.amd64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk build output path: /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel includedir: /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/include bindir: /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/bin libdir: /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/lib sharedir: /wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local/share CC = clang -c CPP = clang++ configured with: "'--prefix=/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local' '--build-prefix=/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build'" CONFIGURING ngs-java Attempt to call undefined import method with arguments ("catdir") via package "File::Spec" (Perhaps you forgot to load the package?) at konfigure.perl line 44. Configuring NGS-JAVA package checking system type... FreeBSD checking machine architecture... amd64 configure: error: unsupported architecture 'FreeBSD':'amd64' CONFIGURING ngs-python Attempt to call undefined import method with arguments ("catdir") via package "File::Spec" (Perhaps you forgot to load the package?) at konfigure.perl line 44. Configuring NGS-PYTHON package checking system type... FreeBSD checking machine architecture... amd64 configure: error: unsupported architecture 'FreeBSD':'amd64' =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for ngs-sdk-3.0.1 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch' mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++ clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java' mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter' clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD mkdir -p /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] error: unable to open output file '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadCollectionItf.pic.o': 'No such file or directory' 1 error generated. clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD gmake[3]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/./Makefile.config.FreeBSD.amd64:109: /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/java/jni_ReadCollectionItf.pic.o] Error 1 gmake[3]: *** Waiting for unfinished jobs.... clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/java' clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] gmake[2]: *** [Makefile:46: java] Error 2 gmake[2]: *** Waiting for unfinished jobs.... clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++ -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++ -c -mmacosx-version-min=10.10 -std=c++11 -o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk -I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/ngs/unix/amd64 -MD clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-disp.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/PackageItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/StringItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/VTable.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ErrBlock.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/dispatch/ErrorMsg.pic.o clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/dispatch' clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-python.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_FragmentIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PackageItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_PileupIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReadIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/python/py_StringItf.pic.o gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/python' clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++.a.2.11.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadCollectionItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/PileupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/PileupEventItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReferenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReferenceSequenceItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/AlignmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadGroupItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ReadItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/FragmentItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/StatisticsItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/StringItf.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/Refcount.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ErrorMsg.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/adapter/ErrBlock.pic.o rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++.a.2 ln -s libngs-adapt-c++.a.2.11.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++.a.2 rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++.a clang++: warning: argument unused during compilation: '-mmacosx-version-min=10.10' [-Wunused-command-line-argument] ar rc /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/ilib/libngs-bind-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadCollection.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReferenceSequence.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReferenceIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Reference.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Pileup.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupEventIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/PileupEvent.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/AlignmentIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Alignment.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadGroupIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadGroup.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/ReadIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Read.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/FragmentIterator.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Fragment.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/Statistics.pic.o /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/obj/language/c++/StringRef.pic.o ln -s libngs-adapt-c++.a.2 /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++.a gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language/c++' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/language' gmake[1]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/Makefile.rules:31: language] Error 2 gmake[1]: *** Waiting for unfinished jobs.... rm -f /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++-static.a ln -s libngs-adapt-c++.a /wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/build/ngs-sdk/FreeBSD/clang/amd64/rel/lib/libngs-adapt-c++-static.a gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk/adapter' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-3.0.1/ngs-sdk' gmake: *** [Makefile:54: ngs-sdk] Error 2 ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/ngs-sdk =>> Cleaning up wrkdir ===> Cleaning for ngs-sdk-3.0.1 build of biology/ngs-sdk | ngs-sdk-3.0.1 ended at Fri Dec 12 01:01:39 EST 2025 build time: 00:00:55 !!! build failure encountered !!!